If the Egyptians were known for their religious tolerance before Christianity became the dominant religion in their country, now that Christianity had taken over, Christians seemed bound and determined to wipe out all possibility of opposition. It's hard for modern scholars to understand and sympathize with the religious fervor that led to the mob destruction of the famous library of Alexandria, renowned throughout the classical world. Visiting Egypt, one is struck by the immense destruction that took place in the name of the true faith. On numerous temples, the faces and torsos of the old gods have been chipped away. Precedents for such destruction can be seen in the practice of pharaohs to chip away a hated predecessor's cartouches and demolition of structures ordered by him. But the only time a pharaoh sought to eradicate all evidence of a competing religion was when successors leveled an entire city erected by the “Heretic King” Akhenaton, who tried to convert Egypt to monotheistic sun worship around 1300 BC.
On the other hand, churches sprung up on the sites of demolished temples and inside many that were left to stand. The Copts painted pictures of Christ and the Apostles directly over the images of the pharaohs and old gods. Thus, taking off from Mircea Eliade's conception of “sacred” (as opposed to profane) land, the same locations conceived as sacred for generations under the new religions became the sacred sites of the new religion. Instead of coming to worship Ammon at Luxor or Karnak or Khnum at Esna or Isis at Philae, one now came to worship Christ. Considering the widespread identifications of Isis with the Virgin Mary, a sense of continuity was further emphasized. In the temple at Wadi Sebua in Nubia, Ammon was painted over with the Apostle Paul so that it appears that Rameses II is worshipping him. The Serapeum was replaced by the Angelion, a cathedral built in the sixth century to honor John the Baptist.
As Christians continued to worship the new God on the same holy sites where they had offered sacrifices to the old Gods, traditional folk magic also remained an intrinsic part of household, everyday life. Egyptians continued to consult oracles for advice, though the wisdom was now sought from Christian saints. They still performed traditional healing spells, simply substituting the name of the old God invoked with that of Christ or one of the saints. For example, a Christian mage exorcised sickness from a child using the old formula, substituting Jesus for Isis: “Let every sickness, suffering and pain cease at once. It is, who speak, the Lord Jesus, giver of healing.”
Obeisances were made in the presence, not of Serapis, but the Christian God. Protective amulets, dating from as late as the sixth century and which previously would have invoked the pot-bellied dwarf god Bes, contained invocations of, for example, "Christ, his mother and all the saints" to protect "Joanna whom Anastasia bore" from a "hateful spirit" and "to chase away from her all fevers and every kind of chill, quotidian, tertian, quartan, and every evil." Dating well into the Christian period were long papyrus rolls, containing directions for performing love spells.
The continuance of magic into Christian times supports the common‑sense concession that the transition between worldviews is never a complete and utter revolution. In this context, Weber's observation that Jesus was “a magician whose magical charisma was an ineluctable source of his unique feeling of individuality” seems especially apt. Further support for continuity between the old and new can be seen in pictorial representations of Christian figures. Early representations of Christ often had him clutching an ankh, the traditional Egyptian fertility symbol which bears a striking resemblance to the Christian crucifix. The saints, especially the four Evangelists, were often depicted by Egyptians as animals or with animal heads. Joseph was portrayed in Egypt wearing the insignia of Serapis on the chair of St.Maximian at Ravenna, providing support that Egyptian identification of Joseph with Serapis and the Virgin Mary with Isis extended out into the Mediterranean world.
As additional support that “plus ca change, plus ca reste la meme chose,” the practical life of the Egyptian peasant continued to be centered around the Nile's regular pattern of flooding. The Nile remained correspondingly a central part of the religious life of Coptic Christians as it had been under the old religion. For example, the Coptic Church today celebrates June 19, the start of one set of flooding, as the feast day of St. Michael, patron saint of the Nile, and the flooding now is attributed to the power of Christ.